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Protein Common Interface Database

PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database. Based on Pfam v31.0 and the PDB of June 2017. ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNARNALigands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i.Pfam-.
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Protein Common Interface Database

DESCRIPTION

PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database. Based on Pfam v31.0 and the PDB of June 2017. ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNARNALigands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i.Pfam-.

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This website dunbrack2.fccc.edu states the following, "PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments." Our analyzers analyzed that the webpage stated "0 and the PDB of June 2017." The Website also stated " ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNARNALigands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i."

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